Publications

Shahin Honarvar, Mark van der Wilk, Alastair F Donaldson (2025). Turbulence: Systematically and automatically testing instruction-tuned large language models for code. 2025 IEEE Conference on Software Testing, Verification and Validation (ICST).

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Ruby Sedgwick, John P Goertz, Molly M Stevens, Ruth Misener, Mark van der Wilk (2025). Transfer learning Bayesian optimization for competitor DNA molecule design for use in diagnostic assays. Biotechnology and Bioengineering.

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Jake Levi, Mark van der Wilk (2025). SynDaCaTE: A Synthetic Dataset For Evaluating Part-Whole Hierarchical Inference. ICML 2025 Workshop on Methods and Opportunities at Small Scale.

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Freddie Bickford Smith, Jannik Kossen, Eleanor Trollope, Mark van der Wilk, Adam Foster, Tom Rainforth (2025). Rethinking Aleatoric and Epistemic Uncertainty. Forty-second International Conference on Machine Learning (ICML).

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Anish Dhir, Cristiana Diaconu, Valentinian Mihai Lungu, James Requeima, Richard E. Turner, Mark van der Wilk (2025). Estimating Interventional Distributions with Uncertain Causal Graphs through Meta-Learning. ICML 2025 Workshop on Scaling Up Intervention Models.

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Anish Dhir, Ruby Sedgwick, Avinash Kori, Ben Glocker, Mark van der Wilk (2025). Continuous Bayesian Model Selection for Multivariate Causal Discovery. Forty-second International Conference on Machine Learning (ICML).

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Guiomar Pescador-Barrios, Sarah Lucie Filippi, Mark van der Wilk (2025). Adjusting Model Size in Continual Gaussian Processes: How Big is Big Enough?. Forty-second International Conference on Machine Learning (ICML).

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Anish Dhir, Matthew Ashman, James Requeima, Mark van der Wilk (2025). A Meta-Learning Approach to Bayesian Causal Discovery. The Thirteenth International Conference on Learning Representations (ICLR).

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Onno P. Kampman, Joe Ziminski, Soroosh Afyouni, Mark van der Wilk, Zoe Kourtzi (2024). Time-varying functional connectivity as Wishart processes. Imaging Neuroscience.

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Yoav Gelberg, Tycho F. A. van der Ouderaa, Mark van der Wilk, Yarin Gal (2024). Variational Inference Failures Under Model Symmetries: Permutation Invariant Posteriors for Bayesian Neural Networks. ICML 2024 Workshop on Geometry-grounded Representation Learning and Generative Modeling.

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Jose Pablo Folch, Calvin Tsay, Robert M Lee, Behrang Shafei, Weronika Ormaniec, Andreas Krause, Mark van der Wilk, Ruth Misener, Mojmír Mutný (2024). Transition Constrained Bayesian Optimization via Markov Decision Processes. Advances in Neural Information Processing Systems 37 (NeurIPS).

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Alexander Terenin, David R. Burt, Artem Artemev, Seth Flaxman, Mark van der Wilk, Carl Edward Rasmussen, Hong Ge (2024). Numerically Stable Sparse Gaussian Processes via Minimum Separation using Cover Trees. Journal of Machine Learning Research.

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Tycho F. A. van der Ouderaa, Mark van der Wilk, Pim de Haan (2024). Noether' s Razor: Learning Conserved Quantities. Advances in Neural Information Processing Systems 37 (NeurIPS).

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Seth Nabarro, Mark van der Wilk, Andrew Davison (2024). Learning in Deep Factor Graphs with Gaussian Belief Propagation. Forty-first International Conference on Machine Learning (ICML).

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Stefano Cortinovis, Laurence Aitchison, James Hensman, Stefanos Eleftheriadis, Mark van der Wilk (2024). Inverse-Free Sparse Variational Gaussian Processes. NeurIPS 2024 Workshop on Bayesian Decision-making and Uncertainty.

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Anish Dhir, Samuel Power, Mark van der Wilk (2024). Bivariate Causal Discovery using Bayesian Model Selection. Forty-first International Conference on Machine Learning (ICML).

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Alexander Immer, Tycho F. A. van der Ouderaa, Mark van der Wilk, Gunnar Ratsch, Bernhard Schölkopf (2023). Stochastic Marginal Likelihood Gradients using Neural Tangent Kernels. Proceedings of the 40th International Conference on Machine Learning (ICML).

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Jose Pablo Folch, James A C Odgers, Shiqiang Zhang, Robert Matthew Lee, Behrang Shafei, David Walz, Calvin Tsay, Mark van der Wilk, Ruth Misener (2023). Practical Path-based Bayesian Optimization. NeurIPS 2023 Workshop on Adaptive Experimental Design and Active Learning in the Real World.

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Tycho F. A. van der Ouderaa, Alexander Immer, Mark van der Wilk (2023). Learning Layer-wise Equivariances Automatically using Gradients. Advances in Neural Information Processing Systems (NeurIPS).

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Jacob Green, Cecilia Cabrera Diaz, Maximilian A. H. Jakobs, Andrea Dimitracopoulos, Mark van der Wilk, Ryan D. Greenhalgh (2023). Current Methods for Drug Property Prediction in the Real World.

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John P Goertz, Ruby Sedgwick, Francesca Smith, Myrsini Kaforou, Victoria J Wright, Jethro A. Herberg, Zsofia Kote-Jarai, Ros Eeles, Mike Levin, Ruth Misener, Mark van der Wilk, Molly M Stevens (2023). Competitive Amplification Networks enable molecular pattern recognition with PCR. bioRxiv.

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Jose Pablo Folch, Robert M. Lee, Behrang Shafei, David Walz, Calvin Tsay, Mark van der Wilk, Ruth Misener (2023). Combining multi-fidelity modelling and asynchronous batch Bayesian Optimization. Computers & Chemical Engineering.

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Harry Jake Cunningham, Daniel Augusto de Souza, So Takao, Mark van der Wilk, Marc Peter Deisenroth (2023). Actually Sparse Variational Gaussian Processes. Proceedings of The 26th International Conference on Artificial Intelligence and Statistics (AISTATS).

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Tycho FA van der Ouderaa, Mark van der Wilk (2022). Sparse Convolutions on Lie Groups. NeurIPS Workshop on Symmetry and Geometry in Neural Representations.

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Jose Pablo Folch, Shiqiang Zhang, Robert M Lee, Behrang Shafei, David Walz, Calvin Tsay, Mark van der Wilk, Ruth Misener (2022). SnAKe: Bayesian Optimization with Pathwise Exploration. Advances in Neural Information Processing Systems (NeurIPS).

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Tycho F. A. van der Ouderaa, David W. Romero, Mark van der Wilk (2022). Relaxing Equivariance Constraints with Non-stationary Continuous Filters. Advances in Neural Information Processing Systems (NeurIPS).

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Sebastian W Ober, David R Burt, Artem Artemev, Mark van der Wilk (2022). Recommendations for Baselines and Benchmarking Approximate Gaussian Processes. NeurIPS Workshop on Gaussian Processes, Spatiotemporal Modeling, and Decision-making Systems.

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Artem Artemev, Tilman Roeder, Mark van der Wilk (2022). Memory Safe Computations with XLA Compiler. Advances in Neural Information Processing Systems (NeurIPS).

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Sebastian Popescu, Ben Glocker, Mark van der Wilk (2022). Matrix Inversion free variational inference in Conditional Student's T Processes. Fourth Symposium on Advances in Approximate Bayesian Inference.

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Tycho F.A. van der Ouderaa, Mark van der Wilk (2022). Learning invariant weights in neural networks. Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence (UAI).

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Pola Schwöbel, Martin Jørgensen, Sebastian W. Ober, Mark van der Wilk (2022). Last Layer Marginal Likelihood for Invariance Learning. Proceedings of the Twenty Fifth International Conference on Artificial Intelligence and Statistics (AISTATS).

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Alexander Immer, Tycho F. A. van der Ouderaa, Gunnar Ratsch, Vincent Fortuin, Mark van der Wilk (2022). Invariance Learning in Deep Neural Networks with Differentiable Laplace Approximations. Advances in Neural Information Processing Systems (NeurIPS).

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Mark van der Wilk, Artem Artemev, James Hensman (2022). Improved Inverse-Free Variational Bounds for Sparse Gaussian Processes. Fourth Symposium on Advances in Approximate Bayesian Inference.

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Seth Nabarro, Stoil Ganev, Adrià Garriga-Alonso, Vincent Fortuin, Mark van der Wilk, Laurence Aitchison (2022). Data augmentation in Bayesian neural networks and the cold posterior effect. Proceedings of the 38th Conference on Uncertainty in Artificial Intelligence (UAI).

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Anish Dhir, Mark van der Wilk (2022). Causal Discovery using Marginal Likelihood. NeurIPS Workshop on Causality for Real-world Impact.

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Vincent Fortuin, Adrià Garriga-Alonso, Sebastian W. Ober, Florian Wenzel, Gunnar Ratsch, Richard E Turner, Mark van der Wilk, Laurence Aitchison (2022). Bayesian Neural Network Priors Revisited. International Conference on Learning Representations (ICLR).

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David R. Burt, Sebastian W. Ober, Adrià Garriga-Alonso, Mark van der Wilk (2021). Understanding Variational Inference in Function-Space. Third Symposium on Advances in Approximate Bayesian Inference.

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Artem Artemev, David R. Burt, Mark van der Wilk (2021). Tighter Bounds on the Log Marginal Likelihood of Gaussian Process Regression Using Conjugate Gradients. Proceedings of the 38th International Conference on Machine Learning (ICML).

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Sebastian W. Ober, Carl E. Rasmussen, Mark van der Wilk (2021). The promises and pitfalls of deep kernel learning. Proceedings of the Thirty-Seventh Conference on Uncertainty in Artificial Intelligence (UAI).

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Binxin Ru, Clare Lyle, Lisa Schut, Miroslav Fil, Mark van der Wilk, Yarin Gal (2021). Speedy Performance Estimation for Neural Architecture Search. Advances in Neural Information Processing Systems (NeurIPS).

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Vincent Dutordoir, Hugh Salimbeni, Eric Hambro, John McLeod, Felix Leibfried, Artem Artemev, Mark van der Wilk, James Hensman, Marc P. Deisenroth, ST John (2021). GPflux: A Library for Deep Gaussian Processes.

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Vincent Dutordoir, James Hensman, Mark van der Wilk, Carl Henrik Ek, Zoubin Ghahramani, Nicolas Durrande (2021). Deep Neural Networks as Point Estimates for Deep Gaussian Processes. Advances in Neural Information Processing Systems (NeurIPS).

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Adrià Garriga-Alonso, Mark van der Wilk (2021). Correlated weights in infinite limits of deep convolutional neural networks. Proceedings of the Thirty-Seventh Conference on Uncertainty in Artificial Intelligence (UAI).

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David R. Burt, Artem Artemev, Mark van der Wilk (2021). Barely Biased Learning for Gaussian Process Regression.

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David R. Burt, Carl Edward Rasmussen, Mark van der Wilk (2020). Variational Orthogonal Features.

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Mark van der Wilk, ST John, Artem Artemev, James Hensman (2020). Variational Gaussian Process Models without Matrix Inverses. Proceedings of The 2nd Symposium on Advances in Approximate Bayesian Inference.

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Miguel Monteiro, Loic Le Folgoc, Daniel Coelho de Castro, Nick Pawlowski, Bernardo Marques, Konstantinos Kamnitsas, Mark van der Wilk, Ben Glocker (2020). Stochastic Segmentation Networks: Modelling Spatially Correlated Aleatoric Uncertainty. Advances in Neural Information Processing Systems (NeurIPS).

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Clare Lyle, Mark van der Wilk, Marta Kwiatkowska, Yarin Gal, Benjamin Bloem-Reddy (2020). On the Benefits of Invariance in Neural Networks.

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Ruby Sedgwick, John Goertz, Molly Stevens, Ruth Misener, Mark van der Wilk (2020). Design of Experiments for Verifying Biomolecular Networks. NeurIPS 2020 Workshop on Machine Learning for Molecules.

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David R. Burt, Carl Edward Rasmussen, Mark van der Wilk (2020). Convergence of Sparse Variational Inference in Gaussian Processes Regression. Journal of Machine Learning Research.

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Lewis Smith, Lisa Schut, Yarin Gal, Mark van der Wilk (2020). Capsule Networks -- A Probabilistic Perspective.

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Vincent Dutordoir, Mark van der Wilk, Artem Artemev, James Hensman (2020). Bayesian Image Classification with Deep Convolutional Gaussian Processes. Proceedings of the Twenty Third International Conference on Artificial Intelligence and Statistics (AISTATS).

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Mark van der Wilk, Vincent Dutordoir, ST John, Artem Artemev, Vincent Adam, James Hensman (2020). A Framework for Interdomain and Multioutput Gaussian Processes.

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Clare Lyle, Lisa Schut, Robin Ru, Yarin Gal, Mark van der Wilk (2020). A Bayesian Perspective on Training Speed and Model Selection. Advances in Neural Information Processing Systems (NeurIPS).

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Mark van der Wilk (2019). Sparse Gaussian process approximations and applications.

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Creighton Heaukulani, Mark van der Wilk (2019). Scalable Bayesian dynamic covariance modeling with variational Wishart and inverse Wishart processes. Advances in Neural Information Processing Systems 32 (NeurIPS).

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David Burt, Carl Edward Rasmussen, Mark van der Wilk (2019). Rates of Convergence for Sparse Variational Gaussian Process Regression. Proceedings of the 36th International Conference on Machine Learning (ICML).

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Alessandro Davide Ialongo, Mark van der Wilk, James Hensman, Carl Edward Rasmussen (2019). Overcoming Mean-Field Approximations in Recurrent Gaussian Process Models. Proceedings of the 36th International Conference on Machine Learning (ICML).

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Dustin Tran, Mike Dusenberry, Mark van der Wilk, Danijar Hafner (2019). Bayesian Layers: A Module for Neural Network Uncertainty. Advances in Neural Information Processing Systems 32 (NeurIPS).

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Mark van der Wilk, Matthias Bauer, ST John, James Hensman (2018). Learning Invariances using the Marginal Likelihood. Advances in Neural Information Processing Systems 31 (NeurIPS).

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Alexander G. de G. Matthews, Mark van der Wilk, Tom Nickson, Keisuke Fujii, Alexis Boukouvalas, Pablo León-Villagrá, Zoubin Ghahramani, James Hensman (2017). GPflow: A Gaussian Process Library using TensorFlow. Journal of Machine Learning Research.

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Mark van der Wilk, Carl Edward Rasmussen, James Hensman (2017). Convolutional Gaussian Processes. Advances in Neural Information Processing Systems 30 (NIPS).

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Rowan McAllister, Yarin Gal, Alex Kendall, Mark van der Wilk, Amar Shah, Roberto Cipolla, Adrian Vivian Weller (2017). Concrete problems for autonomous vehicle safety: advantages of Bayesian deep learning. International Joint Conferences on Artificial Intelligence (IJCAI).

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Alessandro Davide Ialongo, Mark van der Wilk, Carl Edward Rasmussen (2017). Closed-form Inference and Prediction in Gaussian Process State-Space Models. NIPS 2017 Workshop on Time Series.

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Matthias Bauer, Mark van der Wilk, Carl Edward Rasmussen (2016). Understanding Probabilistic Sparse Gaussian Process Approximations. Advances in Neural Information Processing Systems 29 (NIPS).

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Rowan McAllister, Mark van der Wilk, Carl Edward Rasmussen (2016). Data-Efficient Policy Search using PILCO and Directed-Exploration. ICML 2016 Workshop on Data-Efficient Machine Learning.

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Yarin Gal, Mark van der Wilk (2014). Variational Inference in Sparse Gaussian Process Regression and Latent Variable Models - a Gentle Tutorial.

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Mark van der Wilk, Andrew Gordon Wilson, Carl Edward Rasmussen (2014). Variational Inference for Latent Variable Modelling of Correlation Structure. NIPS 2014 Workshop of Advances in Variational Inference.

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Yarin Gal, Mark van der Wilk, Carl Edward Rasmussen (2014). Distributed Variational Inference in Sparse Gaussian Process Regression and Latent Variable Models. Advances in Neural Information Processing Systems 27 (NIPS).

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